PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_8255_iso_4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MYB_related
Protein Properties Length: 633aa    MW: 69727.9 Da    PI: 7.8392
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_8255_iso_4genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.41.7e-08515563348
                                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
                      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                                          +W+  E  +lv++v+++G g+W+ I r        Rt  ++k++w+++l
  cra_locus_8255_iso_4_len_2211_ver_3 515 PWSLTEVVKLVEGVARYGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 563
                                          8****************************99**99************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.092508567IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.9E-13510568IPR009057Homeodomain-like
SMARTSM007171.1E-8512565IPR001005SANT/Myb domain
SuperFamilySSF466891.09E-15514571IPR009057Homeodomain-like
CDDcd116602.08E-18514564No hitNo description
PfamPF002491.2E-6515563IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 633 aa     Download sequence    Send to blast
GVLDCSFPNG SSVEIVYLCL LDSISXVDGD GRLVPATDDE VMVVEDLLKD DKSEVHFAAK  60
NQSIDTTKRS LPETAHSNCS GGQPGNLDVG ATILNIHGDP SMERREAKRI RKPTKRYIEE  120
TSDVGSRESN GRLVSLVELG KRIAHQEEST RSEGMNTSQS QNLEACSSSQ GRSIGIDAST  180
SGGSITKPDF SMLKGEICLD NLSIKDLQET FKATFGRETS VKDKQWLKRR IAMGLTNSCD  240
FSTTTFIIED NRVVKMFKGE TSKSSAASED LIAEAGNQTS GGLTDVCDKE INVHSDSDAK  300
RPESSLLECN SVGEDPNVEQ RVAKRVRKPT KRYIEEISEG ESRESSGRMI TLVRSPESGQ  360
QSAKSVVRPF HHSQQEGRPT VTRQDSFGGS GVQVPFVSRV RRSRPRENFM TLAKLQLDDI  420
GTSAKVVKKA FEEPARMAHD DAGNNVLKAS LSPKWIGQPL IAVSEEGKHH PERIVEHEND  480
IELKSMNSFG YKSDDSNVVN MPAPMGGMRR KHHRPWSLTE VVKLVEGVAR YGAGRWSEIK  540
RLAFASYSYR TSVDLKDKWR NLLRASLTQL PAENGMQNSR KHASIPIPAP ILLRVRELAE  600
TQAQVPPNIS SSKFAGHSGG TDRNSQETRP GYL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K1SBL31e-178A0A0K1SBL3_REHGL; Telomere repeat-binding factor like-protein
STRINGPGSC0003DMT4000063421e-177(Solanum tuberosum)